Pop-ups with LMS

Would this be the same results for most LMS systems when publishing to SCORM.... I have incorporated a lot of pop-ups in my layout for 3 courses, and we have not published to the LMS "Learning Link" from EdComm yet. The client has fallen behing in the implemetation timeline with the LMS. Would the problems encountered in previous post to this thread be the norm, or would these be exceptional circumstances when publishing to SCORM? Thanks

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